PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021873m
Common NameCICLE_v10021624mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 249aa    MW: 28386.7 Da    PI: 4.876
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021873mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.31e-1548882059
                     S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY 20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                     + r+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  Ciclev10021873m 48 NCRGYYRCSTSkGCSAKKQVERCRTDASMLIITYTSSHNHP 88
                     579*****9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007747.5E-123789IPR003657WRKY domain
SuperFamilySSF1182902.75E-134790IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-164890IPR003657WRKY domain
PfamPF031063.0E-134888IPR003657WRKY domain
PROSITE profilePS5081118.8885090IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MMWIISHLSA ALLSQFSKIK DVFRGSNWIF ITHLVPHQDV LKWILPLNCR GYYRCSTSKG  60
CSAKKQVERC RTDASMLIIT YTSSHNHPCP DLHTINLTKQ SKETPQNHQP TGTEFQDHHP  120
TSAPTQEQQL PQEEEKQNEP PIITTPTAED SNEDHFHYLQ SPIRCPQDII ISQEDPFTGN  180
LEKPNETLNL LLDEEPVSYQ NLMAFSTPKS EENDFFDELG ELPSTSSVFT SFMRSNDLFD  240
ERIPVVPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3187944e-45JQ318794.1 Morella rubra microsatellite ZJU099 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444507.10.0hypothetical protein CICLE_v10021624mg
TrEMBLV4TW520.0V4TW52_9R
STRINGPOPTR_0014s11490.17e-68(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-18WRKY family protein